PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT22348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 98aa MW: 11298.4 Da PI: 10.2625 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.5 | 4.9e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+ks rqvt++kRr+g++KKA+ LS+LCd++vav++fs +g+lye OIT22348 9 KRIEEKSSRQVTLCKRRKGLIKKAKQLSILCDVDVAVVVFSDRGTLYES 57 79*********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence |
MGRKKVEMKR IEEKSSRQVT LCKRRKGLIK KAKQLSILCD VDVAVVVFSD RGTLYESSTP 60 SRFLHALLNI YIVSVCLYFT IQNSIIKLFI ITSESREE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 4e-23 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT22348 |