PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22327

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 298aa MW: 32395.5 Da PI: 6.305

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22327	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.2	4e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q ++e++l OIT22327 4 SCNGCRVLRKGCSESCSIRPCLqwiksPESQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQNAVEAVL 104 6************************************************************************************************9998 PP DUF260 97 lke 99 +++ OIT22327 105 RGA 107 776 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PESQSNATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLRGAPIT PIASEVAVNN 120 NGPPLKLPYD IRHINKDDNA IKSNDLHRVR TRCRFKRSAA NTKATKANPV CSGSGDESAH 180 EKVNKSTSHD SSLSHQSETA AMAAPNVECE SREIESLQSA EMAEAEDSAA VEPASVSQVD 240 DRAEDGEIEL ELTLGFAPFA TSHGKPKDTK RSEAVHLLDA AGECEMELGL TFRCDQFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	7e-91	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT22327