PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22327
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 298aa    MW: 32395.5 Da    PI: 6.305
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22327genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.24e-314107199
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q ++e++l
  OIT22327   4 SCNGCRVLRKGCSESCSIRPCLqwiksPESQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQNAVEAVL 104
               6************************************************************************************************9998 PP

    DUF260  97 lke 99 
               +++
  OIT22327 105 RGA 107
               776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PESQSNATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLRGAPIT PIASEVAVNN  120
NGPPLKLPYD IRHINKDDNA IKSNDLHRVR TRCRFKRSAA NTKATKANPV CSGSGDESAH  180
EKVNKSTSHD SSLSHQSETA AMAAPNVECE SREIESLQSA EMAEAEDSAA VEPASVSQVD  240
DRAEDGEIEL ELTLGFAPFA TSHGKPKDTK RSEAVHLLDA AGECEMELGL TFRCDQFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-91LBD family protein