PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22255
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7542.93 Da    PI: 11.3215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22255genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.2e-27959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k+i++k  rqvtfskRr+g+lKKA+ LS+LCd++vav++fs++g+ly++ss
  OIT22255  9 KPIKDKNSRQVTFSKRRKGLLKKAKQLSILCDVDVAVVVFSNHGRLYDFSS 59
              78***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKQLSILCD VDVAVVVFSN HGRLYDFSST  60
NRFFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.21e-24MIKC_MADS family protein