PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21995

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 506aa MW: 56314.2 Da PI: 9.5655

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21995	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.9	3.9e-11	202	246	4	52
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 +G+r+ k +g++ A Irdp +r k+++lg+f+t eeA +a+ ++ + OIT21995 202 HGIRRQK-NGKYGAVIRDP----IRlKQIWLGTFDTVEEASEAYFSYKSE 246 699888.8******8....369****************988766 PP
2	AP2	35.9	1.9e-11	293	339	2	52
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++ GV+ +k +g++ +eI p + k+++lg+f taeeA +a+ +++ OIT21995 293 HIIGVHKNK-WGKYTSEITNPI----TkKKIWLGTFHTAEEASRAYQSKKLE 339 789*999.***99972....36***************9776665 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
METVAKQKEA EEETSNKKQN KITQVVILDS DAAVSSASES QESRRWSAEI LYYKVKEQNH 60 DYMDSNSTVM DLHATKFAGV HKRKCGKYGA AIKDPIKKKK VKLGSFKTAQ PVKANQGSSK 120 SKSSASATAQ LMQKIPSSLL KPQGSNSTNT TSAAERNGKN PFIREIREDP FQEKQGTRRS 180 PSDGCNSNTV TTSNTKAKIS LHGIRRQKNG KYGAVIRDPI RLKQIWLGTF DTVEEASEAY 240 FSYKSEFDKL CQLGNKENKP KDCGQIQHES PVGASSSLDT ASVGRNKRHK TTHIIGVHKN 300 KWGKYTSEIT NPITKKKIWL GTFHTAEEAS RAYQSKKLEF QKLVNAKEPQ STNKNTHSKQ 360 HGKKKLVNGK QGHVNCEAFQ SGQRIDSCEQ SHSISMTRNL LGTSLDTAEE AFHAYHPFKE 420 FNFQCSTKCE LQSNVPTDSS GGEKKLEGQV DEDLWMGQWV QLTGGSEVKF SLKLGLPIID 480 NYGSLLGEFS CLDDLSICYT DDECFA

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

METVAKQKEA EEETSNKKQN KITQVVILDS DAAVSSASES QESRRWSAEI LYYKVKEQNH  60
DYMDSNSTVM DLHATKFAGV HKRKCGKYGA AIKDPIKKKK VKLGSFKTAQ PVKANQGSSK  120
SKSSASATAQ LMQKIPSSLL KPQGSNSTNT TSAAERNGKN PFIREIREDP FQEKQGTRRS  180
PSDGCNSNTV TTSNTKAKIS LHGIRRQKNG KYGAVIRDPI RLKQIWLGTF DTVEEASEAY  240
FSYKSEFDKL CQLGNKENKP KDCGQIQHES PVGASSSLDT ASVGRNKRHK TTHIIGVHKN  300
KWGKYTSEIT NPITKKKIWL GTFHTAEEAS RAYQSKKLEF QKLVNAKEPQ STNKNTHSKQ  360
HGKKKLVNGK QGHVNCEAFQ SGQRIDSCEQ SHSISMTRNL LGTSLDTAEE AFHAYHPFKE  420
FNFQCSTKCE LQSNVPTDSS GGEKKLEGQV DEDLWMGQWV QLTGGSEVKF SLKLGLPIID  480
NYGSLLGEFS CLDDLSICYT DDECFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	100	KRKCGKYGAAIKDPIKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	1e-14	ERF family protein

Link Out ? help Back to Top
Ensembl	OIT21995