PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21885

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 447aa MW: 50603.6 Da PI: 4.8256

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21885	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.6	1.4e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C ++ H+ H++v OIT21885 16 ARACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59 578*****************************667888888876 PP
2	CCT	67.9	2.8e-23	394	437	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OIT21885 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 437 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MVSDSKLASA MGGKTARACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR 60 LKTSSLKESS PDENFPNLES PVSVSLPSWH SGFTRKARTP RNGRKASKSI EDEEEEEVIL 120 KNPIHLVPEI LSDENSLDEN EEQLLYRVPI FDPFVAEFCM SATRNDKMEN VQTTIEADSG 180 FKLESKETLQ HDNISNGDLN RFHGMLPSEM ELAEFAADVE SLLGKGLEDE SFDMEGLGLL 240 EGCNKEGNSM ECSMVSTHEK VKIEEEGEGD EVVMDTTTTN HDIDINGDTF EFKFDYDSPI 300 NINGEDEIGE VVMKINGEDG VVGNGNYNEK KKILLNLDYE GVLTAWADQR SPWTNGERPE 360 LDSNDCWPDC MGNCGTIHPY GIMNGHATII DRGREARVSR YREKRRTRLF SKKIRYEVRK 420 LNAEKRPRMK GRFVKRSNLV PNYPLVK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MVSDSKLASA MGGKTARACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR  60
LKTSSLKESS PDENFPNLES PVSVSLPSWH SGFTRKARTP RNGRKASKSI EDEEEEEVIL  120
KNPIHLVPEI LSDENSLDEN EEQLLYRVPI FDPFVAEFCM SATRNDKMEN VQTTIEADSG  180
FKLESKETLQ HDNISNGDLN RFHGMLPSEM ELAEFAADVE SLLGKGLEDE SFDMEGLGLL  240
EGCNKEGNSM ECSMVSTHEK VKIEEEGEGD EVVMDTTTTN HDIDINGDTF EFKFDYDSPI  300
NINGEDEIGE VVMKINGEDG VVGNGNYNEK KKILLNLDYE GVLTAWADQR SPWTNGERPE  360
LDSNDCWPDC MGNCGTIHPY GIMNGHATII DRGREARVSR YREKRRTRLF SKKIRYEVRK  420
LNAEKRPRMK GRFVKRSNLV PNYPLVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	421	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-98	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT21885