PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21829
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 675aa    MW: 75029.5 Da    PI: 6.0021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21829genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.92.6e-1292936591373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++c+ea+ s++ + +++l+arl elasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi kf h+t N+ 
  OIT21829 293 LISLLVSCVEAIGSRNVTGVNQLIARLGELASPRGSPISRLTAYFTEALALRVARIWPHIFHIIPPRDLD-RLDDDSSTALRLLNQVSPITKFIHFTSNEI 392
               5799****************************************************************98.5678888999******************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v++rled++l++L+vk+gE++
  OIT21829 393 LLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLIETGDRLAEFAEALNLAFEFHP-VVDRLEDVRLWMLHVKEGESV 488
               ************************************************....9**************************.7******************** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               aVn++lq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds+  +lp es +rik+E+  ++r+i+n++aceg+
  OIT21829 489 AVNCALQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIGFSLPLESPARIKIEEL-FARDIRNIIACEGR 586
               ***********966655444..79************************************************************98.************** PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
               er+erhe ++kWr+ +e+ GF+   ++e++  q ++ll++++ + yrv    +++++l+l W d+pL +vSaW
  OIT21829 587 ERTERHECFGKWRKLMEQGGFRCTGITERELLQSQMLLKMYSCEDYRVIkqgNDDAALTLSWLDQPLCTVSAW 659
               ******************************************888*9984445589999************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    
MLAGCSSTLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFGRKDNPR SQSIRPVGSL  60
SVDKPIETKN SSCSLKQNIR LPPSPTTAQT SSYVEGRRES KDEFWEKGRS LKRYADQGCF  120
DDDNCMSRGA KRKKGNRKSV DCSEEVEGYG LSLGQLGGGN FWLQSGYNVS RSVQAAAPFS  180
FSCSGEEESV CYVPSEVISP PPPLSNNPWI DSIVTEITNF GDKNVSTSQD LAKEASVSSA  240
SLDSHGLVLR LNENPGEHEI GNGSRPPNPN DRSEVVAAHN GHNNHREDDA AELISLLVSC  300
VEAIGSRNVT GVNQLIARLG ELASPRGSPI SRLTAYFTEA LALRVARIWP HIFHIIPPRD  360
LDRLDDDSST ALRLLNQVSP ITKFIHFTSN EILLRAFEGK DRVHIIDFDI KQGLQWPSLF  420
QSLASRPNPP THVRITGIGE SKQDLIETGD RLAEFAEALN LAFEFHPVVD RLEDVRLWML  480
HVKEGESVAV NCALQMHRLL YDSSGGILRD FLGLIRSTNP TIILMAEQEA EHNEPSLEAR  540
LVNSLRYYAA VFDSIGFSLP LESPARIKIE ELFARDIRNI IACEGRERTE RHECFGKWRK  600
LMEQGGFRCT GITERELLQS QMLLKMYSCE DYRVIKQGND DAALTLSWLD QPLCTVSAWS  660
PLDAAGSSSS YYQLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein