PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT21656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25079.3 Da PI: 4.5013 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.3 | 2e-13 | 8 | 46 | 13 | 51 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + kR++ +lKK ELS+LCd++++ ii+ +g++ +++ OIT21656 8 LLKRKACVLKKTMELSILCDIKACAIIVDADGTVESWPK 46 68***********************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MKADKRALLK RKACVLKKTM ELSILCDIKA CAIIVDADGT VESWPKYPTD LNPILDRYKQ 60 YSLKKQKKNN DVVVDVENTK GKENVLLALD SKIEAVKRRI EFLNGKSITA MNSDGDGERE 120 EFAEILSDII GGGSNSVNAQ EFGPTEIQPC AYWDGEIGFS TANYDQQLEL DPIEQPCSNG 180 HYGLSGNKNN TADVDFEFDL LMQDEYQFHI FSLLAPEHGQ ITFC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39810.1 | 5e-08 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT21656 |