PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21632
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 427aa    MW: 47939.2 Da    PI: 7.6857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21632genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.8e-09130150526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                C+ f++ G C++Gd+C FaHg
  OIT21632 130 VCSEFRK-GNCSRGDNCEFAHG 150
               7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MEGLYAEQHH HKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSADPVSD MFMDSPKSDS  60
DSLFQKFLPY NSLDEDDSDP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD  120
PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPTR YRTEACKDGK NCKRKVCFFA  180
HTPRQLRVLP PSCHESSGSG SSPRNSPVEK KYRNLNHCCM FCHSVSASPT STLMGMSHMS  240
PPMSPSLSPP LSPAKTQFSS PMSRYTDRFG SVESSCGMSQ LDHAGLMSYK DALTELVTSL  300
EAMSVNANDE ANSSSSAAVA VNNFDGKLPC LDVSFNNNNI NNYDDQHQFL LSPYSTPSPS  360
PVSSSRTKFH TRDFPSPSPV SSSGLSFSPV SSSNMSFVED INNATNRYYN DNGLGGPDFG  420
WVNDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-76C3H family protein