PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21598

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 605aa MW: 65376.3 Da PI: 8.2571

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21598	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	220	264	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OIT21598 220 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 264 79****************************************985 PP
2	QLQ	61.8	1.9e-21	152	188	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k OIT21598 152 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 188 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MDFGVVGSLD NGGVICSDNT SSNMFTTAVE TKQKWYGSTG FHKNERSSTT NTATEDDWNN 60 KDTKLAKTSD GFSSSKAAAA AAAATMLFQQ QLRSNCTNSQ QMLSFSSPNS QNVTMPFYHY 120 TSTPFTRNSS GCGSGAMNAG NMHGVIAAGV KGPFTPSQWM ELEHQALIYK YITANVPIPP 180 YLLNPIRKAL ESAGFTTFAG LRPNVLGWGA FHLGFSNSND PEPGRCRRTD GKKWRCSRDA 240 VADQKYCERH MNRGRHRSRK PVEGQTGATS AKLMNVSSSA SASASAALAP GGAASNTLAL 300 SHPQLSNLPP AVTNPSTTSP YLERNYTPKE NFGERYSDTK GLTVVSSSEK QSQYSIQKEQ 360 NPYGVTSRPE FGLVCADSLI NPLNKNSSLV NCRGYGNSED IRDQESKSQH HPLRQFMDDW 420 PKNQSDQSTV SWPDIDLQSD RTQLSISIPV ITSDFMSSTS SPANDKLTTS PQYRMSQEHE 480 TTTQMGLGIG TIISEHNQRQ GNWIPITWET SMGGPLGEVL HSTNNSSGDC KSKTAALNLM 540 TEGWDRSPRM GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTNEGSSLCN GLLGTTLMNP 600 TLPAM

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MDFGVVGSLD NGGVICSDNT SSNMFTTAVE TKQKWYGSTG FHKNERSSTT NTATEDDWNN  60
KDTKLAKTSD GFSSSKAAAA AAAATMLFQQ QLRSNCTNSQ QMLSFSSPNS QNVTMPFYHY  120
TSTPFTRNSS GCGSGAMNAG NMHGVIAAGV KGPFTPSQWM ELEHQALIYK YITANVPIPP  180
YLLNPIRKAL ESAGFTTFAG LRPNVLGWGA FHLGFSNSND PEPGRCRRTD GKKWRCSRDA  240
VADQKYCERH MNRGRHRSRK PVEGQTGATS AKLMNVSSSA SASASAALAP GGAASNTLAL  300
SHPQLSNLPP AVTNPSTTSP YLERNYTPKE NFGERYSDTK GLTVVSSSEK QSQYSIQKEQ  360
NPYGVTSRPE FGLVCADSLI NPLNKNSSLV NCRGYGNSED IRDQESKSQH HPLRQFMDDW  420
PKNQSDQSTV SWPDIDLQSD RTQLSISIPV ITSDFMSSTS SPANDKLTTS PQYRMSQEHE  480
TTTQMGLGIG TIISEHNQRQ GNWIPITWET SMGGPLGEVL HSTNNSSGDC KSKTAALNLM  540
TEGWDRSPRM GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTNEGSSLCN GLLGTTLMNP  600
TLPAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-100	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT21598