PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT21583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 16959.4 Da PI: 7.6755 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.3e-39 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d++++l+yeA +r++dPvyG+vg+i+ l++++ ql+ +la+lk+e OIT21583 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSCVHRIYGASNVGKMLQQVQEHQRADVADTLYYEAYCRIKDPVYGCVGIITVLHEEIYQLQCQLAKLKAE 104 6***********************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence |
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSCVHRI YGASNVGKML QQVQEHQRAD 60 VADTLYYEAY CRIKDPVYGC VGIITVLHEE IYQLQCQLAK LKAEIDLLKT QSPAQGQQVE 120 FSANLLADQN GVYTSSPSLF DPSFYWFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-49 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT21583 |