PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21289

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 652aa MW: 71683.2 Da PI: 7.3916

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21289	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.7e-16	309	368	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g OIT21289 309 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 368 78*****************988886678446***********************98 PP
2	AP2	45.3	2.2e-14	413	462	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OIT21289 413 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 462 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MKSMNDDNNN CSSHRSSTNS NNNNNSNSHN DASSNWLGFS LSPHMKMEVT SSEPQHQHHQ 60 FNNQSSALAQ SFYLSSSPMN VTSNTSALCY GVGENNPFGH SSLSVMPLKS DGSLCIMEAL 120 SRSHADAMVQ SSSSPKLEDF LGGASQYGNH EREAMALSLD SLYYHQNEGY YSPMQCHGMY 180 QESLLDETKP TQISHCDAQM TAVSGNELKS WGHYAIDQHI NATCSSMVGA GGGGGTCGSG 240 GGTVGGNDLQ SLSLSMNPGS QSSCVTPRQI SPNELECVAI ETKKRASGKV VQKQPVHRKS 300 IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD 360 LAALKYWGPS THINFPLENY QKELEDMKNM TRQEYVAHLR RKSSGFSRGA SMYRGVTRHH 420 QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF RGVNAVTNFD ISRYDVEKIM 480 ASNTLPAGEV ARRNKEREPI ESIEYNINGH KNEEPCVQND NNNNGNNVTD WKMVSYQSSN 540 PSLGNYRNPS FSMALQDLIG IDLMNSSNHT ILDDQQNKIG NHFSNASSLV TSLGSSREAS 600 PDKSAASLIF TKPTKFAVPS TNVNACILSA QLRPIPVSIS HLPVFAAALN DA

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MKSMNDDNNN CSSHRSSTNS NNNNNSNSHN DASSNWLGFS LSPHMKMEVT SSEPQHQHHQ  60
FNNQSSALAQ SFYLSSSPMN VTSNTSALCY GVGENNPFGH SSLSVMPLKS DGSLCIMEAL  120
SRSHADAMVQ SSSSPKLEDF LGGASQYGNH EREAMALSLD SLYYHQNEGY YSPMQCHGMY  180
QESLLDETKP TQISHCDAQM TAVSGNELKS WGHYAIDQHI NATCSSMVGA GGGGGTCGSG  240
GGTVGGNDLQ SLSLSMNPGS QSSCVTPRQI SPNELECVAI ETKKRASGKV VQKQPVHRKS  300
IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD  360
LAALKYWGPS THINFPLENY QKELEDMKNM TRQEYVAHLR RKSSGFSRGA SMYRGVTRHH  420
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF RGVNAVTNFD ISRYDVEKIM  480
ASNTLPAGEV ARRNKEREPI ESIEYNINGH KNEEPCVQND NNNNGNNVTD WKMVSYQSSN  540
PSLGNYRNPS FSMALQDLIG IDLMNSSNHT ILDDQQNKIG NHFSNASSLV TSLGSSREAS  600
PDKSAASLIF TKPTKFAVPS TNVNACILSA QLRPIPVSIS HLPVFAAALN DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-142	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT21289