PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21048
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 839aa    MW: 93874.4 Da    PI: 6.2597
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21048genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.7e-23127228199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l++
  OIT21048 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLL 223
               99*****************************7444..44459************************************************..8889999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OIT21048 224 GIRRA 228
               *9986 PP
2Auxin_resp117.51.1e-38253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
    OIT21048 253 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MKLSTSGMGQ QAQEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKDT YLPVEFGIPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPLYPG TSSYQDSNNE AINRMAWLRG NSGELGPHSV NLQSFGMLPW  420
MQQRVDSPIL SNDLNQHYQA MLATGLQSYG SGDLLKQQLM QFQQPVQYLQ HASSDNSILQ  480
QQQVMQQAVH QHMLPAQTQM LSENLQRQQQ QQSNNRSEEQ AHQHAYQEAF QIPRDQLQQR  540
QQPPNIPSPF SKEDFADLNS KFSASVAPSG VQNMLGSFCS EGSSNSLNIN RTGQSVVIEQ  600
PSQQSWISKF TQSQLNSCSN SSPLPTYGKD TLNPRENCSL DTQNQALFGA SIDSSGLLLP  660
TTVSNVTTTC TDISSIPLGM NSGYQNSLYG YVQDSSELLH NAGQNDPPNA SHTFVKVYKS  720
GCVGRSLDIT QFRSYHELRR ELGQMFGIEG FLEDPQRSGW QLVFVDREND ILLLGDDPWE  780
AFVNNVWYIK ILSPEDVQKL GKEEAESLNR GAVERMSSST SADDRDLVSG MPSLGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein