PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21021

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 498aa MW: 56068.6 Da PI: 6.9115

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21021	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	154	203	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT21021 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203 78*****************......55**********************997 PP
2	AP2	42.9	1.2e-13	246	296	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g OIT21021 246 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 296 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MWNLNDSPIR RMEDESEEGC SSPIELDEKG KRVGSVSNSS SSALVIEEGN NSEEEEDGEK 60 GKKKRNTPSK IFGFSVDDDN FSSESEPPVT RQFFPVDESE MGGGSMNFPR AQWAGVKFCQ 120 SVPRGNTIAG NPTEVSQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY 180 LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYEADLK QMTNLTKEEF VHVLRRQSTG 240 FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV 300 TNFDRSIYEN ELNSTESADN AADHNLDLSL GGSNSKENSR EMGDNRGQNS SSLQLDAHWR 360 HQESRSKLPS PIGFDAQRRD GYNETETLQL LSQTHLNFPG SLQPNINEMQ RIGQFIRDGE 420 SHMVQVFPRQ FNSYQIQSPS SSNVGRIGGT NSQEWYTNNI PPQIFATAAA SSGFPQQIVR 480 PQNWSQNTGF HHNFMRPS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MWNLNDSPIR RMEDESEEGC SSPIELDEKG KRVGSVSNSS SSALVIEEGN NSEEEEDGEK  60
GKKKRNTPSK IFGFSVDDDN FSSESEPPVT RQFFPVDESE MGGGSMNFPR AQWAGVKFCQ  120
SVPRGNTIAG NPTEVSQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYEADLK QMTNLTKEEF VHVLRRQSTG  240
FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV  300
TNFDRSIYEN ELNSTESADN AADHNLDLSL GGSNSKENSR EMGDNRGQNS SSLQLDAHWR  360
HQESRSKLPS PIGFDAQRRD GYNETETLQL LSQTHLNFPG SLQPNINEMQ RIGQFIRDGE  420
SHMVQVFPRQ FNSYQIQSPS SSNVGRIGGT NSQEWYTNNI PPQIFATAAA SSGFPQQIVR  480
PQNWSQNTGF HHNFMRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-131	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT21021