PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20923
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 353aa    MW: 39698.9 Da    PI: 7.8556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20923genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-06426326
              S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
              ++lC+ffa  G C  G+ C F+H+
  OIT20923  4 RVLCKFFAH-GACLKGEHCEFSHD 26
              89***6666.*************5 PP
2zf-CCCH23.59.4e-083454526
              --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               C ++++ G C yG+rC++ H+
  OIT20923 34 VCTYYQK-GACAYGSRCRYEHV 54
              5******.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MSQRVLCKFF AHGACLKGEH CEFSHDWKTS PNNVCTYYQK GACAYGSRCR YEHVKLSRSQ  60
PSAQSSAQPQ QYLLSSSVST NVAPGAGAQS AGLVPGIYTE YSASSKPTWN QNSELHDTLD  120
NDDMIELRSV SPADRPICAF AAAGNCHRGE KCPHIHGDLC PTCGKHCLHP FRPQEREEHI  180
KTCENRQKHI DLLKRSQEIE CSVCLECVLS KSTAAERKFG ILSECDHPFC ISCIRNWRGS  240
SSSGMDVNSA LRACPICRKL SYFIIPSVIW YFTKEEKEKI VDSYKTKLRS IDCKHFDFGS  300
GTCPFGTSCF YRHQYRDGRL EEVVLRHLGS EDGNTVIAKD IRLSDFLSNL EIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-152C3H family protein