PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20828

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 312aa MW: 35103.3 Da PI: 6.7899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20828	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.4e-12	106	155	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r+ h ++Er+RR+++N+ + Lr+l+P++ + ++ + a+i A++++k+ OIT20828 106 QRMIHIAVERNRRKQMNEYLTLLRSLMPSS---YVQRADQASIIGGAINFVKE 155 6999************************...9*************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MALETVVYPQ EQFGYFYNKE FYASSTSSFP HSISNWESSS CNSMMQNQEK EYYWGISNSS 60 PEAAAACNNV EENQLFLEAA DTSGGRRKRR RTARGSNKNR EELENQRMIH IAVERNRRKQ 120 MNEYLTLLRS LMPSSYVQRA DQASIIGGAI NFVKEIEQHL QTLEAQKRTS THQQQHENGI 180 SSPLFADFFS FPQYSTTHSN HASSSPEAAT NSTEPAAKNR SVMADIEVNL VDSHANLKIL 240 SKRRPKQLLK IVAGLQCLCL TILHLNVTTV DQMVLYTLSA KVEEGCQLTT VEEIAQAVNQ 300 LLAGIQEEAA SR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	91	RKRRR
2	87	92	RKRRRT
3	107	118	RMIHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-80	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT20828