PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20712

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 423aa MW: 48805.4 Da PI: 9.9822

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20712	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.7	1.8e-26	13	68	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+ k s++prsYY+Ct+++Cp+kkkvers d+++++it +g Hnhe OIT20712 13 DGYNWRKYGQKKDKVSQCPRSYYKCTHTKCPAKKKVERSI-DGHITQITHNGWHNHE 68 9*************************************.*************7 PP
2	WRKY	83.4	2.2e-26	182	239	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+vkg+++ r YYrCt+++C+++k+v r+++dpk+++ tY+geHnh+ OIT20712 182 VNDGYNWRKYGQKVVKGNQHLRDYYRCTYPKCKAHKQVMRASTDPKAIK-TYKGEHNHD 239 58******************************************987.7*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MTSFGALDKP ACDGYNWRKY GQKKDKVSQC PRSYYKCTHT KCPAKKKVER SIDGHITQIT 60 HNGWHNHELP QPSKQRKDGS ALNGTDCSEV RPDIRTHDRT VVNSSDVSSP SRPDQISTQL 120 ASLLLVKRKR DETINNWIEV DEGHDEPDVK RKKKAVKTLA SSHGTVAGQK IVLPTRSEVV 180 VVNDGYNWRK YGQKVVKGNQ HLRDYYRCTY PKCKAHKQVM RASTDPKAIK TYKGEHNHDT 240 PTYKTCQRYL ALRKGCGDIA DKILRFLGKP SNNKINHFAD IHTKPFVEAA RIYQWPDKVA 300 TQAAGSELKV RETFLRSCMI GYFNDPFSYD PKSEVLHKWF TNRWQVCSVL KITPISHNRF 360 LFQFPLREEA ERINVSEWHW NERRLSLEWW TPVAGTDLAS KRSETQMDQS IRHPASCLVT 420 GYF

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MTSFGALDKP ACDGYNWRKY GQKKDKVSQC PRSYYKCTHT KCPAKKKVER SIDGHITQIT  60
HNGWHNHELP QPSKQRKDGS ALNGTDCSEV RPDIRTHDRT VVNSSDVSSP SRPDQISTQL  120
ASLLLVKRKR DETINNWIEV DEGHDEPDVK RKKKAVKTLA SSHGTVAGQK IVLPTRSEVV  180
VVNDGYNWRK YGQKVVKGNQ HLRDYYRCTY PKCKAHKQVM RASTDPKAIK TYKGEHNHDT  240
PTYKTCQRYL ALRKGCGDIA DKILRFLGKP SNNKINHFAD IHTKPFVEAA RIYQWPDKVA  300
TQAAGSELKV RETFLRSCMI GYFNDPFSYD PKSEVLHKWF TNRWQVCSVL KITPISHNRF  360
LFQFPLREEA ERINVSEWHW NERRLSLEWW TPVAGTDLAS KRSETQMDQS IRHPASCLVT  420
GYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	154	KRKRDETINNWIEVDEGHDEPDVKRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-66	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT20712