PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20596

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 386aa MW: 42397.6 Da PI: 6.5714

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20596	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.3	3.2e-08	61	106	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H+++p+ OIT20596 61 VWMCEVCEQAAASVTCKADAAALCVTCDRDIHSAnplaqrHERIPV 106 689*****9*******************66899999998875 PP
2	CCT	69.8	7.1e-24	310	353	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ OIT20596 310 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRN 353 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGILRGAANC FPGGWGAAAA VAKPCEYCHL DAALVFCRTD NMFMCLGCDT RVHGNACHER 60 VWMCEVCEQA AASVTCKADA AALCVTCDRD IHSANPLAQR HERIPVVPFY DPVESVVKST 120 AATLLVSINN SNSTSTTTTM TTTTAVATDF SKVTACLGHH EEDYNSDPWI SPNTMTTKLP 180 VNTVEMKPMD FLFSDSENIL DFDYSVSIDT NSQPNYNSAN DSVVPVQSTI KPLPFQHQEK 240 HFEIDFTQSH IKSYTTPSLS HSVSSSSLDV GIVPDGSSIS EISYPFVRSV NSNIEMGNSA 300 QAEKLIGMNR EARVLRYREK KKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRNDSAGAGV 360 DSDIDQIFSG AGFITNDSRY SVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGILRGAANC FPGGWGAAAA VAKPCEYCHL DAALVFCRTD NMFMCLGCDT RVHGNACHER  60
VWMCEVCEQA AASVTCKADA AALCVTCDRD IHSANPLAQR HERIPVVPFY DPVESVVKST  120
AATLLVSINN SNSTSTTTTM TTTTAVATDF SKVTACLGHH EEDYNSDPWI SPNTMTTKLP  180
VNTVEMKPMD FLFSDSENIL DFDYSVSIDT NSQPNYNSAN DSVVPVQSTI KPLPFQHQEK  240
HFEIDFTQSH IKSYTTPSLS HSVSSSSLDV GIVPDGSSIS EISYPFVRSV NSNIEMGNSA  300
QAEKLIGMNR EARVLRYREK KKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRNDSAGAGV  360
DSDIDQIFSG AGFITNDSRY SVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	4e-99	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT20596