PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20477

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 398aa MW: 43154.3 Da PI: 5.5033

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20477	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	55	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + OIT20477 55 KGPWSQEEDAVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 100 79****************************.*********985 PP
2	Myb_DNA-binding	57.6	2.9e-18	107	151	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ OIT20477 107 RKPFTEEEDNIIISAHAVHGNR-WASIAKLLP-GRTDNAIKNHWNST 151 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MEEEAEQSNF KLRDAAVNDG EPSAVAFKAL DDSEAMLPDG SEDGNSGGGG GGKVKGPWSQ 60 EEDAVLSELV SKFGARNWSL IARGIPGRSG KSCRLRWCNQ LDPAVKRKPF TEEEDNIIIS 120 AHAVHGNRWA SIAKLLPGRT DNAIKNHWNS TLRRRFAGLR KVKPVHCERL DNSSIDRVEV 180 SSEETKPFED HNQSKAQEAG EVVLMQCEPS QFENRSTNEM SASPEKIPHL VSGRCNSTIM 240 EKNPSVSRPI AKIGAFDVLN LSSAAFASSR TVPVQGPLLQ VSSPPFGICK LLEGVSDDPL 300 IPLRCGHGCC SATSMSFSAS SLLGPEFVEY EELPAVSSHE LTAIATDLNN IAWIKSGLEN 360 AGRLSRRTTS QRDYQGSSTS TPMPMSNFTL PNEVESLS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MEEEAEQSNF KLRDAAVNDG EPSAVAFKAL DDSEAMLPDG SEDGNSGGGG GGKVKGPWSQ  60
EEDAVLSELV SKFGARNWSL IARGIPGRSG KSCRLRWCNQ LDPAVKRKPF TEEEDNIIIS  120
AHAVHGNRWA SIAKLLPGRT DNAIKNHWNS TLRRRFAGLR KVKPVHCERL DNSSIDRVEV  180
SSEETKPFED HNQSKAQEAG EVVLMQCEPS QFENRSTNEM SASPEKIPHL VSGRCNSTIM  240
EKNPSVSRPI AKIGAFDVLN LSSAAFASSR TVPVQGPLLQ VSSPPFGICK LLEGVSDDPL  300
IPLRCGHGCC SATSMSFSAS SLLGPEFVEY EELPAVSSHE LTAIATDLNN IAWIKSGLEN  360
AGRLSRRTTS QRDYQGSSTS TPMPMSNFTL PNEVESLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	3e-93	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT20477