PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20426
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 497aa    MW: 55433.2 Da    PI: 5.6218
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20426genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.8e-37171092103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sws++ nsfvv++  efa++vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
      OIT20426  17 FLSKTYDMVEDPSTDSVVSWSKSHNSFVVWNVPEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGHKHLLKSIS 104
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
      OIT20426 105 RRKPS 109
                   **976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MDGVHENTAV GNSPPPFLSK TYDMVEDPST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTPQ  120
VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELVKLKQ QQQATDHQMQ TVGQRFQLME  180
KRQQQMMSFL AKAMQSPGFV AQLVHQQNGS NRRIAGMNKK RRLPDQDEEN VAGNPVNMSR  240
DGRIVRYQPS MNEAAKALLR QILKINAPGR LDNRLKNTNG LLTDNPLSPK NALSCDTSSR  300
ISGVTLSEVL SMSSQSHIIS DSGFPFNSCS SVMSESQSST TVVPGEAKVP KLPETDALNS  360
LTDHDLPEFS QEQRINRQET FGITGLKRPE TGNVPYIDNT QAILDGVTAI APDGFSADTH  420
VDVLLDDVPK LPAINDIFWD QILSASPLTG DTDEIGMEDG LEKEEDFLGV QENDLDKLNH  480
MCHLTEQMGL LSSAAQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-130HSF family protein