PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20277
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 418aa    MW: 47616.9 Da    PI: 6.5896
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20277genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.77.2e-20201252255
   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                rl+Wtp+L ++F +av++LG  +kA Pk i+e+m+v+ Lt ++++ HLQkYR+
  OIT20277 201 RRLQWTPDLEKKFKKAVRRLG--QKARPKLIMEMMDVPNLTQKQIANHLQKYRV 252
               69******************4..78****************************7 PP
2Myb_DNA-binding49.41.1e-15202251148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r+ WT+++++++++av++lG + ++k+I+++m   ++t kq+ +++qky+
         OIT20277 202 RLQWTPDLEKKFKKAVRRLGQKaRPKLIMEMMDvPNLTQKQIANHLQKYR 251
                      789**********************************************7 PP
3Response_reg55.14.4e-19221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+vd + + + +l++ale++ + +v++ ++++ al +l+e+   +Dl+++D++mp+md +e++ + +  + ++pii+++++ +  +++ea+  G+ 
      OIT20277  22 ILLVDNDTTSLLNLASALEEHSF-KVTTIEQATVALSILRERIdqFDLVMVDVNMPEMDCFEFINSTQLIK-DIPIILMSSNVKRGMVEEAVAQGVC 116
                   89*********************.***************887667*******************9987777.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                    f++Kp++ ++l +
      OIT20277 117 FFFMKPISTKKLKN 130
                   ********999976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MDFESLSFEK NDVPAPFCGL RILLVDNDTT SLLNLASALE EHSFKVTTIE QATVALSILR  60
ERIDQFDLVM VDVNMPEMDC FEFINSTQLI KDIPIILMSS NVKRGMVEEA VAQGVCFFFM  120
KPISTKKLKN IWQHVYRHQK KVSQNSENNK ANNQVEVMDS TTCANKKLQD TKGKSIVNSA  180
EEEDHSLVSE KPMDGQQKKR RRLQWTPDLE KKFKKAVRRL GQKARPKLIM EMMDVPNLTQ  240
KQIANHLQKY RVQKQQAPHV QPATYSILNQ SKIMSQTPHP LVPLSHSQYG INSVSQSLSF  300
PLNTSTLLHS GTNMFNHFPD NGHRFNVLNS NEFAANFNDP FQETYLPQPP ALPSLVSPNP  360
NDYVLTELDG WNDYLASPEN LNGEMIENQI DSYYSWLEKD PISSSSTQDN VPTRSQNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199203KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-45ARR-B family protein