PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 155aa    MW: 17127.7 Da    PI: 6.4784
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19934genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.62.6e-4471061100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k++++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e
  OIT19934   7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPIQQRADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLEMQLAMAQTE 106
               7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MGGGTSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MIQELPIQQR  60
ADAVNSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLEMQL AMAQTEILCI QMQQESAPNL  120
PAIQMEQYDG STPQALSFGS PNYLVAGEEF RRCGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-76LBD family protein