PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19819
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 651aa    MW: 73864.3 Da    PI: 5.6462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19819genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22125225198
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt+sd  ++  l++ +k a+++       ++k+  ++l+++d++g++W++k+ ++++++r++lt+GW  Fv +++L +gD vvF   ++++++l+v+
  OIT19819 125 FCKALTTSDIKSNWGLSVHRKDANKCfppldmAQEKPI-QELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWGAFVTSKKLLAGDLVVFL--RDETGKLHVG 222
               99****************************97434444.49************************************************..569999**** PP

               EE- CS
        B3  96 vfr 98 
               ++r
  OIT19819 223 IRR 225
               *98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    
MVDLLASNSQ LKHFEGDNAL CREIWRACSG SLLDVPKLGE RVHYFPRLHM DQLEQSSNLE  60
WIQGLQLSHL PRKILCRVLH IRLLVEHETE EVYAETVLLP NQEQNEPSTP EFCPLEPPRP  120
QYQSFCKALT TSDIKSNWGL SVHRKDANKC FPPLDMAQEK PIQELIVNDL QGNEWRFKHV  180
FQGQPRRHLL TNGWGAFVTS KKLLAGDLVV FLRDETGKLH VGIRRLSYQC NSIGSSTFSR  240
QSMEGVLAVA SHAFATRSLF SVYYKPCHNR SSQFIMSLSN YFEGGNHGPG VGTISRTQQS  300
SLDSHVKRTS GMDQMSFPQG QHTTNLLLEE DQYMQESEAI SNSARPTMMA LEIGQQSVES  360
LNNIHHIEDN VLQPHTAVAR ENNEGFIPNE TVAIQAQDEN FDELFKETDF PDFVNTSLDT  420
ITLDWDSDLR STIQDFDEWL EEQEETNPPG MQTCSEDHSR QTSSILEQPT SSQVMSISST  480
PSRIPYKGPG RGDEQVPWGR YQVARRCLPI LNRVVSRYPN SLVNFKVASS IFQSLHLEIL  540
AELVYSLDNL TVMNLSKDQF NVAGQHLWDL KSSGIELGWL EKRLAHIDGA FSMGNLLQRR  600
QAVTLRMGET LATFRQLDEE LGCINKELHE LSLKVGPNPP MRFHPVLEGL L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.13e-92ARF family protein