PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19799

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 373aa MW: 41861.7 Da PI: 5.5882

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19799	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.4e-06	16	59	2	39
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + r C+ ++e+ + l+C+ ++ lC +C e H+ Ht+ OIT19799 16 QRRLCDFCSENTALLYCRADCAKLCFSCDREVHSTnqlftkHTR 59 6789*****************************66778888875 PP
2	zf-B_box	19	2.9e-06	62	104	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +++ ++++ C ++++ +C++C e+H + H+++pl OIT19799 62 LCDSCDSSPASILCCTDSCVFCHNCDWESH-NlslspaHERRPL 104 6*****************************.6688999988775 PP
3	CCT	59.2	1.4e-20	327	369	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++RYkeK+ktR++eK+irY sRK++AesR R+KGrF+k OIT19799 327 RVTAVSRYKEKKKTRRYEKHIRYVSRKVRAESRTRIKGRFAKM 369 7899*************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MTELKEDQED QNRQPQRRLC DFCSENTALL YCRADCAKLC FSCDREVHST NQLFTKHTRW 60 LLCDSCDSSP ASILCCTDSC VFCHNCDWES HNLSLSPAHE RRPLEGFAGC PSVSELLSIL 120 GFEDLGKKAL LYGDSVTSDG GGYGFSDWLV WDTPSVVSLD DLIAPNDSGH NFQAIGLPPL 180 PKNRNAACGK HKEEILSQLR ELSKLEPNSS DDQDDIVPFQ FMEPAQNRHL GFKGSGFMQN 240 SEHAVVPSAE GSAFNWCSDT GEFTDQGFSS SLADCFIETK CLLPDRDSDV GDASGGANEE 300 QSHNPPIAET FQMVPKIAHR ELNSQERVTA VSRYKEKKKT RRYEKHIRYV SRKVRAESRT 360 RIKGRFAKMD MHQ

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MTELKEDQED QNRQPQRRLC DFCSENTALL YCRADCAKLC FSCDREVHST NQLFTKHTRW  60
LLCDSCDSSP ASILCCTDSC VFCHNCDWES HNLSLSPAHE RRPLEGFAGC PSVSELLSIL  120
GFEDLGKKAL LYGDSVTSDG GGYGFSDWLV WDTPSVVSLD DLIAPNDSGH NFQAIGLPPL  180
PKNRNAACGK HKEEILSQLR ELSKLEPNSS DDQDDIVPFQ FMEPAQNRHL GFKGSGFMQN  240
SEHAVVPSAE GSAFNWCSDT GEFTDQGFSS SLADCFIETK CLLPDRDSDV GDASGGANEE  300
QSHNPPIAET FQMVPKIAHR ELNSQERVTA VSRYKEKKKT RRYEKHIRYV SRKVRAESRT  360
RIKGRFAKMD MHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	8e-82	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT19799