PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19337
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 743aa    MW: 83962.9 Da    PI: 6.5192
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19337genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.45.1e-1203717402374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++ L+ cA+av+++d + a+++L+++++++s+ gd mqRla+y++++L+ar+a+s++++y al + +ts    +++l+a++lf  ++P+ k+s++  N++I
  OIT19337 371 RTILTLCAQAVAADDRRTANEFLKQIRQNSSSMGDGMQRLAHYVANGLEARMAGSGTQIYTALISMPTS---AADVLKAYQLFLAACPFRKLSNFFSNKTI 468
               67899**********************************************************999998...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               ++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef++ +ak++e++++e+L+++++E+
  OIT19337 469 MNVAERAKTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLANYAESFNVPFEFKA-IAKKWETIKVEDLEIRKDEV 568
               **************************************************9*****************************.7******************* PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               l+Vn+ ++  +llde+v ++s+rd vL+l+++l+P+v++    +  +n++ F +rf eal +ys++fd+lea++pre +er+ +E+ ++gre++nvvace 
  OIT19337 569 LVVNCLYRFRNLLDETVVVNSPRDIVLNLIRTLKPDVFIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIHERMLIEKIIFGREVMNVVACEA 669
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               aer+er et+++W+ r  +aGF+++pl+e+++  ak  ++ +++d + ++ + ++l++gWk+r ++++S W+
  OIT19337 670 AERIERPETYKQWKVRNIRAGFRQLPLNEEIMRIAKERVKAYHKD-FVIDVDGHWLLQGWKGRIVYALSTWK 740
               *******************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MVMDKNYKGL YEATSAIQLK DEALSFFPDL NLINNLRVSD HTLVQRNHVN IPQFQPDVLV  60
PSAVDNSHED YDFSDVVLKY ISQMLMEENI EEKACMFQES AALQAAERSF YEVIGEKYPP  120
SHNQDMPNLG QIDGRYPVDS SSSNYYSCVS DVSDGLLCPN WNPDIGGDSD SSHAQHFPVD  180
GAVASTSQSS HSSPSSSETV TDAHLDSPVS SIQIPDIFSD SESIMQFKKG VEEASKFLPT  240
GNSLLLDVRY NVVGKEDNEY GKNAVVKVEN WGKHQSPEGS RGKKNVHHDD FDAMEERSHK  300
QSAVFNESTV RSEMFDRVLL CSGGKNEFAL RESWQTVSSK NAPEDGLPKG SNGRKSRGKR  360
QGSKRDTVDL RTILTLCAQA VAADDRRTAN EFLKQIRQNS SSMGDGMQRL AHYVANGLEA  420
RMAGSGTQIY TALISMPTSA ADVLKAYQLF LAACPFRKLS NFFSNKTIMN VAERAKTVHI  480
IDFGIMYGFQ WPCFIQRLSS RPGGPPKLRI TGIDFPNPGF RPAERVEETG KRLANYAESF  540
NVPFEFKAIA KKWETIKVED LEIRKDEVLV VNCLYRFRNL LDETVVVNSP RDIVLNLIRT  600
LKPDVFIQGI VNGAYNAPFF ITRFREALFH YSSVFDMLEA NIPREIHERM LIEKIIFGRE  660
VMNVVACEAA ERIERPETYK QWKVRNIRAG FRQLPLNEEI MRIAKERVKA YHKDFVIDVD  720
GHWLLQGWKG RIVYALSTWK AAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein