PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT19278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 25801.2 Da PI: 5.316 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 56 | 1.2e-17 | 41 | 90 | 1 | 50 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+l r+C ++Cvlapyfp ++p kf +h++FGasn++k l+ OIT19278 41 PCAACKILCRRCIDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKSLQVCT 90 7*******************************************999765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MDCINKTTII TTSQTLSSSS FSAGGSTAAP PSSPPVVPIT PCAACKILCR RCIDKCVLAP 60 YFPPTEPLKF TTAHRVFGAS NIIKSLQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS 120 GNYFEYQAFA IGSRSQAAKT YLERRYGSFT DSSRGSLLKD ALFALRETLQ GEKLTSTNCT 180 VAVLGIGEPF HMLDKDTIQG LINEFELAGE EAPAASTDAA ADAESAVPEA VAPTNEGAAP 240 MDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-24 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT19278 |