PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19040

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 690aa MW: 77277.4 Da PI: 6.1038

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19040	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.7e-06	98	118	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H OIT19040 98 VPCIFFQQ-GFCLKGDRCPFFH 118 79****.*********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MEEILQSLPA KNLKPDVVTW TSRFGAYSKK KQYQRCLEIF EEMIDEGCYP DGGTTKVLLS 60 SCSSEDQIEL VTTGSSVPPV ASVAPTPNVP YGSGKQGVPC IFFQQGFCLK GDRCPFFHAP 120 ISVSNKAPPH PVSTASTEKT PIKKAFGGFE KCVQGKTFSQ ASTWKSGELP VQAQPVGKLG 180 THLSKNDAAF NENVLPPNSV IDFSHHRHKP KSVPPTNGNP VGRSNRVQQS VRFDDHSGIQ 240 NKDDDISREL SPGFDVLVDD ELRGNDFYHG EDQYGRNEGR NEYDIGHSAD YTSVADIDQD 300 AYHDVYGRDS HDRLPSRSGR VQHRPSSERI QGESAHPERR RYGRAYSPEE VRESDLRHRL 360 SKHKRVNGLR SVISHDYASE KHVDNRGYQS SRRDRHHLPS HDSSVASRLQ GRIKLPSRSS 420 SPTNGTDMRL DRDMDRARDR GRLSLERPQL LSQQGRLRDR IKGRVQEDLN NAGRNNSGPR 480 LRRDISENDS DFSGPRSLAE LKGRKTADIS EQNVNEQQAL GKRKFQKRDG YQQSGGDLSF 540 EGPMPLQEIL KRKRSETGMT SDKSEDYQRE RKDHSLVTSS ISRSRSNLGQ KEESPPSGGK 600 NGPQETISAG HQSPLHDGAN ELEAEEGMIV EEEDDQDPKG HDQRDYDYEQ VDGEDYNLDE 660 GENADAGEEY LDEDDDDGDD FAKKMGVVFS

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MEEILQSLPA KNLKPDVVTW TSRFGAYSKK KQYQRCLEIF EEMIDEGCYP DGGTTKVLLS  60
SCSSEDQIEL VTTGSSVPPV ASVAPTPNVP YGSGKQGVPC IFFQQGFCLK GDRCPFFHAP  120
ISVSNKAPPH PVSTASTEKT PIKKAFGGFE KCVQGKTFSQ ASTWKSGELP VQAQPVGKLG  180
THLSKNDAAF NENVLPPNSV IDFSHHRHKP KSVPPTNGNP VGRSNRVQQS VRFDDHSGIQ  240
NKDDDISREL SPGFDVLVDD ELRGNDFYHG EDQYGRNEGR NEYDIGHSAD YTSVADIDQD  300
AYHDVYGRDS HDRLPSRSGR VQHRPSSERI QGESAHPERR RYGRAYSPEE VRESDLRHRL  360
SKHKRVNGLR SVISHDYASE KHVDNRGYQS SRRDRHHLPS HDSSVASRLQ GRIKLPSRSS  420
SPTNGTDMRL DRDMDRARDR GRLSLERPQL LSQQGRLRDR IKGRVQEDLN NAGRNNSGPR  480
LRRDISENDS DFSGPRSLAE LKGRKTADIS EQNVNEQQAL GKRKFQKRDG YQQSGGDLSF  540
EGPMPLQEIL KRKRSETGMT SDKSEDYQRE RKDHSLVTSS ISRSRSNLGQ KEESPPSGGK  600
NGPQETISAG HQSPLHDGAN ELEAEEGMIV EEEDDQDPKG HDQRDYDYEQ VDGEDYNLDE  660
GENADAGEEY LDEDDDDGDD FAKKMGVVFS

Link Out ? help Back to Top
Ensembl	OIT19040