PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT18912
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 267aa    MW: 29023.1 Da    PI: 5.1753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT18912genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161050547
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
         OIT18912 10 TDEEDRIILQAHAVHGNK-WASIARLLP-GRTDNAIKNHWNST 50
                     89****************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MKLTILPLLT DEEDRIILQA HAVHGNKWAS IARLLPGRTD NAIKNHWNST LRRRCAELGK  60
LRSDSSNVPE DVSAEKSKVS SEETQSCGDV NSSKAIEGKD VSSQENQEDN HYEDKSHEEV  120
QRSDVANDPP TLFRPVARIS AFSAYGSLNA PETLVQTPRL TPIQSPDLGI SKLLEGAFSD  180
RLVPHQCGHG CCGNASLENN GSSLLGPEFV DYADAPSFSS HELATLATEI SNVAWFKSGL  240
ENSSIEVIFN PATRGTCGTS HLPSRPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.15e-62MYB family protein