PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT18787
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 272aa    MW: 29848.8 Da    PI: 8.5886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT18787genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002299121123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++C + F ++  L  H++ H
  OIT18787  99 FSCNYCQRKFYSSQALGGHQNAH 121
               89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MKFPTSDNSC TSLKVEAPYL SPTTVLSNFQ NKLQSEQKME SQRTEEVSQN QTTDEQENDD  60
LILDLSLNTD HGSKSNIQTS SSSDPNSRGN NNETEPRVFS CNYCQRKFYS SQALGGHQNA  120
HKRERTMAKR GQKISSAAAN FGYDKYSSMA SLPLHGSFNR SLGIQVHSLI HKPSSPFGAP  180
LYGHPGWSIR RPIDQQPAIG RLAPPDCYSN NTYNGGTSSG GGAARFDNNI QKFPAVVDGI  240
SAYRWDSGGG GPHISKSNNQ EELKKLDLSL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.17e-39C2H2 family protein