PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08585
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 300aa    MW: 33841.5 Da    PI: 8.0708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08585genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-083151526
              --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               C ++++ G C yG+rC++ H+
  OIT08585 31 VCTYYQK-GACAYGSRCRYEHV 51
              5******.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
RVLCKFFAHG ACLKGEHCEF SHDWKTSPNN VCTYYQKGAC AYGSRCRYEH VKLSRSQPSA  60
QSSAQPQQYL LSSSVSTNVA PGAGAQSAGL VPGIYTEYSA SSKPTWNQNS ELHDTLDNDD  120
MIELRSVSPA DRPICAFAAA GNCHRGEKCP HIHGDLCPTC GKHCLHPFRP QEREEHIKTC  180
ENRQKHIDLL KRSQEIECSV CLECVLSKST AAERKFGILS ECDHPFCISC IRNWRGSSSS  240
GMDVNSALRA CPICRKLSYF IIPSVIWYFT KEEKEKIVDS YKTKLRFITL FLFCTYFSFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-115C3H family protein