PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08425

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 367aa MW: 42730.7 Da PI: 4.4982

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08425	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.7e-35	39	131	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d ++++++sws+ +n+f+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll+ i+ OIT08425 39 FLTKTYELVDDVNTNDIVSWSKGNNTFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFANEGFLRGQRHLLKAIR 126 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ OIT08425 127 RRKTS 131 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MDPNFASIKE EFPGSSEDSS FMWIPKPMEG LHENGPPPFL TKTYELVDDV NTNDIVSWSK 60 GNNTFIVWDP QTFAMNLLPR YFKHSNFSSF VRQLNTYGFR KVNPDQWEFA NEGFLRGQRH 120 LLKAIRRRKT SNFHPGQASN QGIDSYIELG KLELDGEIDR LRREKQVLMM ELAKLRQQQQ 180 TTKSYIKAME EKLKRTEQKQ QQMINFMAKG IQNPRFLEQM MQQKERRKEQ IEDEIRLKRR 240 RPIDQGPSNN VGVVELGHGV NDENHNIKQE PQEYYGEIYG FDDFELEGLV VSMQGQNGNT 300 ISFEDYTIEK EDIGELESEN KAIDEGFWDD LLDENVEDDI TLLGIEEEDE DVDVLAQQLG 360 FLGSTPK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MDPNFASIKE EFPGSSEDSS FMWIPKPMEG LHENGPPPFL TKTYELVDDV NTNDIVSWSK  60
GNNTFIVWDP QTFAMNLLPR YFKHSNFSSF VRQLNTYGFR KVNPDQWEFA NEGFLRGQRH  120
LLKAIRRRKT SNFHPGQASN QGIDSYIELG KLELDGEIDR LRREKQVLMM ELAKLRQQQQ  180
TTKSYIKAME EKLKRTEQKQ QQMINFMAKG IQNPRFLEQM MQQKERRKEQ IEDEIRLKRR  240
RPIDQGPSNN VGVVELGHGV NDENHNIKQE PQEYYGEIYG FDDFELEGLV VSMQGQNGNT  300
ISFEDYTIEK EDIGELESEN KAIDEGFWDD LLDENVEDDI TLLGIEEEDE DVDVLAQQLG  360
FLGSTPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	241	RRKEQIEDEIRLKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-127	HSF family protein

Link Out ? help Back to Top
Ensembl	OIT08425