PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08408

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 549aa MW: 59985.2 Da PI: 7.1723

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08408	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	301	359	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OIT08408 301 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 359 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MDKGWGLTLE NSSDKVGFFK NKPFFGFNLS PRLNNIKGGE MFSGAEFPAD EKRRGMVNEV 60 DFFSEKKSIH DVVVKKENSE GNNTMRTDLF VNTGLQLVTA NTGISDQSTV DDGISSEVEE 120 KRTKNEQLAQ LQVELERMNT ENQRLKGMLT QVTNSYSALQ MHLVTLMQQQ QQLISRTEST 180 HNHEVIEVKS EEKNQEKDGN IVPRQFMELG PSSAKADPMD EPSQSHSTSE ERTLSGSPRN 240 HMEMSRDKAI GREESPESES WVPNKVPKLM NSSKPVEQTA EATMRKARVS VRARSEAPMI 300 SDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTILIT TYEGTHNHPL 360 PPAAMAMAST TSAAASMLLS GSMPSADGLM NTNFLARTIL PCSSNMATIS ASAPFPTVTL 420 DLTQNPNAMS NYHQRTQAPQ FQVPLPAGLN HPNFVGSMSA PQMPQVLGQA LYNQSRFSGL 480 QVSQDNIHHP SFSDTLSAAT AAITADPNFT AALAAAISSI IGGSHPNNGN NPTSGPTSNS 540 NKTSSFSGN

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MDKGWGLTLE NSSDKVGFFK NKPFFGFNLS PRLNNIKGGE MFSGAEFPAD EKRRGMVNEV  60
DFFSEKKSIH DVVVKKENSE GNNTMRTDLF VNTGLQLVTA NTGISDQSTV DDGISSEVEE  120
KRTKNEQLAQ LQVELERMNT ENQRLKGMLT QVTNSYSALQ MHLVTLMQQQ QQLISRTEST  180
HNHEVIEVKS EEKNQEKDGN IVPRQFMELG PSSAKADPMD EPSQSHSTSE ERTLSGSPRN  240
HMEMSRDKAI GREESPESES WVPNKVPKLM NSSKPVEQTA EATMRKARVS VRARSEAPMI  300
SDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTILIT TYEGTHNHPL  360
PPAAMAMAST TSAAASMLLS GSMPSADGLM NTNFLARTIL PCSSNMATIS ASAPFPTVTL  420
DLTQNPNAMS NYHQRTQAPQ FQVPLPAGLN HPNFVGSMSA PQMPQVLGQA LYNQSRFSGL  480
QVSQDNIHHP SFSDTLSAAT AAITADPNFT AALAAAISSI IGGSHPNNGN NPTSGPTSNS  540
NKTSSFSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-138	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT08408