PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08320
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 310aa    MW: 33966.4 Da    PI: 10.0482
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08320genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.49.9e-28142196258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hA+rRpRg+gGrF
   OIT08320 142 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHAMRRPRGCGGRF 196
                69*******************9666.555.6*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MSIMHTLFSK GNEGIAQNPV ATLSSTVPWW NSGLVSQSDP FGQLKSASVE HSELPKGNAT  60
EFTIFSGDWK SSGYGQNLSN IQAAATSANM DYRSHFELGF GQSLISAKYS YGGEQSVGLF  120
SAYGPQLSGR VMLPLNLASD EGPIFVNAKQ YHGILRRRKS RAKEMEKKAL KPRKPYLHLS  180
RHLHAMRRPR GCGGRFLNTR KMNGTMKGGK TNDTVKTGDV HSFYPTGSQN SEVLQSDSSN  240
LSSPKETTGS RFCHLSEVTN MYSRGNLDPF LFQDLRPSVQ AIPDMMNTGH GILMAGKWVS  300
AADSCCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.17e-43NF-YA family protein