PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08245

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 562aa MW: 61756.6 Da PI: 5.7972

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08245	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	69.7	3.6e-22	200	242	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrC+RtDGKkWRCsr+v +k+CErH+hrgr rsrk++e OIT08245 200 LEPGRCKRTDGKKWRCSRDVALHQKYCERHMHRGRPRSRKHVE 242 69***************************************98 PP
2	QLQ	50.9	4.7e-18	139	173	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+ +L+ Q+++yKy+++ PvPp+Ll+ i+ OIT08245 139 PFTWSQWKELEKQAMIYKYMVSAIPVPPDLLLSIC 173 8*******************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MGLVEGSING FNVSDKAKLD VGKISTTTTT TICYNFQLQN TESFPSKIMM VHHQDPHRPF 60 SDDDDNGGGG DSGPTLNHNE ANKMPSSNEH NVYSDASFLP PLPPPVTGGA AVVRTFQPFD 120 ISTNSSPVVE GMAAALGFPF TWSQWKELEK QAMIYKYMVS AIPVPPDLLL SICTNSSGAS 180 LTTSASGSVQ GQRCRNIRDL EPGRCKRTDG KKWRCSRDVA LHQKYCERHM HRGRPRSRKH 240 VEVHAPLNNN NDNKKTRNHP VTLESTPIAV PKPPPTGQTN SLSTQPLRSA FQQMEGPLFL 300 HDKMGQNIST DSSFNELHRS SGWTMEGELV AKAGAGQQWQ HLMDSNIHPA DWQDSYREEA 360 LNLLACRDLE RTEDVSMRHN GEFNFMINPE LLSLDKQTVR EAPRDLINAW SNDNIYNNSN 420 NENMEEGSLW PSEGNISPSS LTLSMAMAAG NALDEDMGLE SSVMNNSYQN KSWEKFSWVP 480 FASGGPLAEV LHPSSSINQG ENPASSYTSN CDSISPAATT VSSPSGVLQR TMFSHSDGSV 540 CNSPILAPPT NTSETVPFQW LS

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MGLVEGSING FNVSDKAKLD VGKISTTTTT TICYNFQLQN TESFPSKIMM VHHQDPHRPF  60
SDDDDNGGGG DSGPTLNHNE ANKMPSSNEH NVYSDASFLP PLPPPVTGGA AVVRTFQPFD  120
ISTNSSPVVE GMAAALGFPF TWSQWKELEK QAMIYKYMVS AIPVPPDLLL SICTNSSGAS  180
LTTSASGSVQ GQRCRNIRDL EPGRCKRTDG KKWRCSRDVA LHQKYCERHM HRGRPRSRKH  240
VEVHAPLNNN NDNKKTRNHP VTLESTPIAV PKPPPTGQTN SLSTQPLRSA FQQMEGPLFL  300
HDKMGQNIST DSSFNELHRS SGWTMEGELV AKAGAGQQWQ HLMDSNIHPA DWQDSYREEA  360
LNLLACRDLE RTEDVSMRHN GEFNFMINPE LLSLDKQTVR EAPRDLINAW SNDNIYNNSN  420
NENMEEGSLW PSEGNISPSS LTLSMAMAAG NALDEDMGLE SSVMNNSYQN KSWEKFSWVP  480
FASGGPLAEV LHPSSSINQG ENPASSYTSN CDSISPAATT VSSPSGVLQR TMFSHSDGSV  540
CNSPILAPPT NTSETVPFQW LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	4e-34	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT08245