PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08228

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 424aa MW: 46964 Da PI: 5.7085

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08228	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.7	8.4e-08	373	406	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OIT08228 373 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 406 569*****************************87 PP
2	ELK	27.7	6.3e-10	327	348	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OIT08228 327 ELKHELKQGYKEKLVDIREEIL 348 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MAYNPSHMSQ EMDMHHFSDE NSAVLRSILP EQLAQSSPDV KPLDHQQPPT WLNSAILRQE 60 SHYTGTGGRG AGENFLNLHS NSELSAAASQ ASNQWLSRSI LQRNVSDVKT SNNSSAVMAA 120 ADLKNDDGNN NNDNGNNNAG GQLTDSEVVG GGGGGTDGIL NWQNAGYKAE ILAHPLFEQL 180 LSAHVACLRI ATPVDQLPRI DAQLAQSQQV VAKYSSLGQN IGDDKELDQF LTHYVLLLCS 240 FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDEDDQ VDSEANLFDG 300 SLDAHDGMGF GLPTESERSL MERVRQELKH ELKQGYKEKL VDIREEILRK RRAGKLPGDT 360 TSVLKAWWQS HAKWPYPTEE DKAKLVQETG LQLKQINNWF INQRKRNWHS NPSSSTTSKS 420 KRKR

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MAYNPSHMSQ EMDMHHFSDE NSAVLRSILP EQLAQSSPDV KPLDHQQPPT WLNSAILRQE  60
SHYTGTGGRG AGENFLNLHS NSELSAAASQ ASNQWLSRSI LQRNVSDVKT SNNSSAVMAA  120
ADLKNDDGNN NNDNGNNNAG GQLTDSEVVG GGGGGTDGIL NWQNAGYKAE ILAHPLFEQL  180
LSAHVACLRI ATPVDQLPRI DAQLAQSQQV VAKYSSLGQN IGDDKELDQF LTHYVLLLCS  240
FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDEDDQ VDSEANLFDG  300
SLDAHDGMGF GLPTESERSL MERVRQELKH ELKQGYKEKL VDIREEILRK RRAGKLPGDT  360
TSVLKAWWQS HAKWPYPTEE DKAKLVQETG LQLKQINNWF INQRKRNWHS NPSSSTTSKS  420
KRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	404	424	RKRNWHSNPSSSTTSKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-178	TALE family protein

Link Out ? help Back to Top
Ensembl	OIT08228