PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08153
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 357aa    MW: 40870.7 Da    PI: 4.9036
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08153genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63e-36461382103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F kg+k+ll++i+
      OIT08153  46 FLTKTYEMVDDSSTDHVVSWNRGGQSFVVWDPHAFSTSLLPRFFKHNNFSSFVRQLNTYGFRKIDPEK---------WEFANEAFLKGNKQLLRNIR 133
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
      OIT08153 134 RRKTT 138
                   **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MMNPLYLVKE EYPGSSSGGG GGEPPPAVMT PPQPKEGLHD IGPPPFLTKT YEMVDDSSTD  60
HVVSWNRGGQ SFVVWDPHAF STSLLPRFFK HNNFSSFVRQ LNTYGFRKID PEKWEFANEA  120
FLKGNKQLLR NIRRRKTTNS QLLPTEQALG PCVELGRFGF DGEVDRLRRD KQVLMMELVK  180
LRQQQQNTLS YLRSLEVRLQ GTERKQQQMM NFLARAMQNP EFVQQLIRQK EKRKELEEAI  240
TKKRRRTIDQ GPSTLDVGGS SHPIKSEPLE FGEGSGFQVS ELEALALEMQ GFGRARRDQH  300
EEETREGLEQ FGNTDRELDE GFWEELFNDE DVSGNEDGED EDVNILAERL GFLDSSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232246KRKELEEAITKKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-128HSF family protein