PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08049
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 297aa    MW: 33173.7 Da    PI: 9.7958
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08049genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-1370114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
         OIT08049  70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MVSVYPTPPA GQDFYYMGDP MKTGLPRLHS IQSSSNGAGT LRNLNSSTGS VVPDDHNKKT  60
RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK  120
SGTSEHVPPP RPKRKAAHPY PQKAPKKVVS QVGSIQFQPP GALPEPGFGI GPDSLSVPGN  180
TINFSPWTYD NVPAISTTHM RKDDAQVSSG GVMQNCSSSS NESMPRICTT KESNAQKESK  240
KQMKGVYSLW VKRCNFMKDS PLSECAGDLA QFKLMNYSFE NNVLLRSDLF PSCFWCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.29e-45MYB_related family protein