PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07871
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 408aa    MW: 45743.9 Da    PI: 9.7189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07871genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065355374323
               ETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
               C+ Cgk+F  ++ L++H++++
  OIT07871 355 CSQCGKPF-KPEKLHTHMKSC 374
               ********.**********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MEREIRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR LRDVKRWLGE  60
LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK DVTCGEKGVL  120
ATMQKEQTNQ EDHIQDPFMD SSKKTPSEIE EESQNIASET STLTTDSPKF QEEEEKDSEN  180
KTKQEKVNIF ENNSSSFSSS SSSSFGSKKT KKKTEDHVKE NGEKISTTPS SEKPSKNPSF  240
NKSRSYSNGA SSIFRNLITC GAVDTNDSGI IPIRKSRPSF SSSGEKAVSF SSEIYKAEKV  300
GGSQRIFGTA WNQQHQHTNG RKSCDGAYSS SKNKNEFGSR RSVSANYKPV NVPNCSQCGK  360
PFKPEKLHTH MKSCKGMKAL AKGSNSATEK TSKDASKVDS VSGTYLTH