PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07825

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 412aa MW: 45630.1 Da PI: 9.2691

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07825	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	68.7	7.5e-22	114	157	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+C H+hrg rsrk++e+ OIT07825 114 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHMHRG-RRSRKHVEA 157 79*********************************.799999987 PP
2	WRC	62	9e-20	300	335	2	37
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 +ep rCrR+DGKkWRCsr++++ +k+CE+H+hrg + OIT07825 300 TEPQRCRRSDGKKWRCSRNAVPRQKYCESHMHRGAK 335 79*******************************976 PP
3	QLQ	40.5	8.4e-15	50	86	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT aQ+++L Q+ ++Ky+++++PvP +L + i++ OIT07825 50 SVFTTAQFHELQIQAVIFKYIVSGLPVPFHLFFTIWN 86 67*****************************999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MQPHLSSATP LSHSGKDERE KKEGSPPCIK LSLGYVVEEE EKGVNAIAKS VFTTAQFHEL 60 QIQAVIFKYI VSGLPVPFHL FFTIWNTVSG SLGSAVINKL YPTLGRFDYA SMMDPEPGRC 120 RRTDGKKWRC KRDVIPGQKY CGQHMHRGRR SRKHVEASEY VMKPDDISIT SKRTKLYASS 180 DDPGSKCAPA SSKTSCLSST SRNNQNNNVE DSSSKPRPTN SCNSKQDNHM TCNRKDTVTC 240 LRTPFFIAGN DADSKSIDFS RISPSKTNQK QSYGDARNSG GLVPVFGISA KSDLEHTTET 300 EPQRCRRSDG KKWRCSRNAV PRQKYCESHM HRGAKKIMAA SDSVIVEPSK PSSRFCHQVI 360 PKNDGTGINL NTSLSISTLP DPRNITEDDD SNSNSTSDAT TITDEIPAFV SH

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MQPHLSSATP LSHSGKDERE KKEGSPPCIK LSLGYVVEEE EKGVNAIAKS VFTTAQFHEL  60
QIQAVIFKYI VSGLPVPFHL FFTIWNTVSG SLGSAVINKL YPTLGRFDYA SMMDPEPGRC  120
RRTDGKKWRC KRDVIPGQKY CGQHMHRGRR SRKHVEASEY VMKPDDISIT SKRTKLYASS  180
DDPGSKCAPA SSKTSCLSST SRNNQNNNVE DSSSKPRPTN SCNSKQDNHM TCNRKDTVTC  240
LRTPFFIAGN DADSKSIDFS RISPSKTNQK QSYGDARNSG GLVPVFGISA KSDLEHTTET  300
EPQRCRRSDG KKWRCSRNAV PRQKYCESHM HRGAKKIMAA SDSVIVEPSK PSSRFCHQVI  360
PKNDGTGINL NTSLSISTLP DPRNITEDDD SNSNSTSDAT TITDEIPAFV SH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-28	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT07825