PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07809

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 500aa MW: 53786.3 Da PI: 8.0461

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07809	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIT07809 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	16.7	2e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ OIT07809 134 FKCERCTKKYAVQSDWKAHMKTC 156 89*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEAMCVHHD PSRALGDLTG 120 IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA 180 FCDALAQESA RAQPMRSTNT EENLKVDEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP 240 ADNQNQAGVQ LQAAQGTITP VSTTTVTATT ISTTASTTGP SSSKVFASVF PSSSTSVGHP 300 HSSYSDILCA IGPEQMSAIE PMSLSLSSSF YLSANNGSTL FQDHTGHGQH YGPTTQPALS 360 ATALLQKAAQ MGATSSNNSF LRGLGLAMSS TSTSDNISHV KLENNVEVPG LGIQLPSNGP 420 SGQWTDLMMG PSHDSMMFGN KPPTLDFLGL GNDANVTSSN GFSALLSSME GGFGVATSYG 480 GVATRGEPWD DHSDRKPSML

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEAMCVHHD PSRALGDLTG  120
IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAQESA RAQPMRSTNT EENLKVDEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP  240
ADNQNQAGVQ LQAAQGTITP VSTTTVTATT ISTTASTTGP SSSKVFASVF PSSSTSVGHP  300
HSSYSDILCA IGPEQMSAIE PMSLSLSSSF YLSANNGSTL FQDHTGHGQH YGPTTQPALS  360
ATALLQKAAQ MGATSSNNSF LRGLGLAMSS TSTSDNISHV KLENNVEVPG LGIQLPSNGP  420
SGQWTDLMMG PSHDSMMFGN KPPTLDFLGL GNDANVTSSN GFSALLSSME GGFGVATSYG  480
GVATRGEPWD DHSDRKPSML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT07809