PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07754
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 678aa    MW: 75697.3 Da    PI: 6.2606
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07754genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22111210197
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++ +k+a+e+       ++  + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF +   +++ l+v
  OIT07754 111 FCKILTASDTSTHGGFSVLRKHANEClppldmtQS--TPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLR--GDNGDLRV 207
               99****************************96544..44558************************************************3..36777799 PP

               EEE CS
        B3  95 kvf 97 
               +v+
  OIT07754 208 GVR 210
               987 PP
2Auxin_resp102.84.3e-34237316183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vgv d+++ +W++SkWrsLk
    OIT07754 237 ASHAITTQTLFVVYYKPRT--SQFIIGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGVGDISS-QWSESKWRSLK 316
                 789***************6..9**********************************************777.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MGSDDMYTEL WKACAGPLVD VPRTEERVYY FPQGHIEQLE ASTNQALKQQ IPQFNLPSKI  60
LCRVVHVQLL AEIETDEVYA QITLHPEAEQ DEPSSPDPCP PDLPKHTVHS FCKILTASDT  120
STHGGFSVLR KHANECLPPL DMTQSTPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW  180
STFVTSKRLV AGDAFVFLRG DNGDLRVGVR HLARQQSHMP QSVISSQNMH LGVLATASHA  240
ITTQTLFVVY YKPRTSQFII GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGV  300
GDISSQWSES KWRSLKIQWD EPASIVRPDR VSPWEIEPFV APTSVDVAQP GIKIKRSRPL  360
ELPHTDISAA SAASPFWYPG SGPTLEVSHL GSIADNQLYW SSEQNSSLSN GVSNTSCRTH  420
LSGAWQHSML ANGSLNMLRD SIEDNKQLTA RSILLDYGSP MSSRASNGLL LDQVNRGNKH  480
AISSTCRLFG IDLRNNSNNT PSGEKDAPNV TSNCADGAPT VHDGSEVDMD QNVEHLNPSE  540
EKKQVQLEAL LNDTHKQGVT SSRTRTKVQM QGVRVGRAVD LTGLSGYDDL IIELEKIFDI  600
KGELCPRNKW EVVYTDDEGD MMLVGDDPWL EFCKMVRRIF IYSSEEVKKM SPRCKLPILS  660
LEGEGTMPSV DSELKSER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0ARF family protein