PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07624
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 333aa    MW: 35803.5 Da    PI: 9.1067
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07624genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.7e-07174195627
               -SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
               Cr +  t tC++G++C+F Hg+
  OIT07624 174 CRWWGDTSTCRFGSKCRFVHGK 195
               555556889***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MDFFYGKSND SQASKVRSLD VSPINTQNFI GRGRFYPGPK PRILDPYSSS DSSGSSSNRV  60
LSPLARYLHS SSPVPFASDS PERRSLVNSS SGSRSGSAAA GVFRSPLASI ENIEIPPAFR  120
TPVKVEEDVV VMDGILVEPK YSARAKSLPS TSDSGRLSSS TSGSENSSHK SDVCRWWGDT  180
STCRFGSKCR FVHGKEDLRP TAFANRNQSE ALSSRSYSSG SRAYGPRGRS VHHQVNSAVS  240
STESAAMATP TTVKKVVSIK DKEPPSSDSS PSSTTSTIAI SGTDWSPLDD NIEVSLPSSG  300
EKCPSREDVD AHIQTVLYGL SERKRLPVFV EFS