PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT07530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 27223.2 Da PI: 6.501 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123 | 1.5e-38 | 39 | 140 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+aela+++++ OIT07530 39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQAELAVVQTQ 139 7***********************9989*********************************************************************9988 PP DUF260 101 l 101 l OIT07530 140 L 140 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MDEPPSDGTS ENRRKGPGKR ATGAVEPLAS AALPASTAPC GACKFLRRKC ISGCIFAPHY 60 GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL 120 ALQQQVASLQ AELAVVQTQL INNRYAVENA LQTSQQQHHH LQQQQLHQEH HHIAILQPTY 180 SNNSSVSNNL INNINSANTF NSTAFDQLPD DTCATTVPNN SPSFDPIHQE DEEEEESHNP 240 IVFTNQMFH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-57 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT07530 |