PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06989

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 967aa MW: 108606 Da PI: 6.8283

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06989	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.4e-41	112	189	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hsk++ +lvs+l+qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa OIT06989 112 ICQVDDCGVDLSNAKDYHRRHKVCEMHSKSSRALVSNLMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 189 5**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence
MEARMGAETQ LFNKSLEWDP NDWKWDGDLF IAKPKIPSSN YQFFPLQTGN SSSSCSDEVN 60 IGEFEKRRRR RENDENLEYD SASLSLKLGE QRGHPREFGK RTKLNTTSSR AICQVDDCGV 120 DLSNAKDYHR RHKVCEMHSK SSRALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH 180 NKRRRKTQAD SDDNSKTLND VQASGYSLMS LLRILSNMHS NRPKHIEDQD LLSHLLRSLA 240 SQGVPNGDNN LSGLLQASSN LLNNRSPSRN SDIVSLVSNG SQGPPILKEQ HFATLAAQGS 300 QRSSGVHDVR LEDVRTKSCR SPGTSFPNQN CSPAYAQARE SSARRSKLIN FDLNDVYDGS 360 DDGGENLDRS PLPSDRGIGP LEYRSWLQQD SHQSSPPSRN SDSASTQSPS SSSSDAQSRT 420 DRIVFKLFGK DPSDFPYVLR AQILDWLSHS PTEIESYIRP GCIVLTIYLR LPESAWEELC 480 CDLSSSLSRL LDFPGDSFWR KGWIYIRMQN QIAFVHDGQL LLDVPLPSET VEHTSILSVK 540 PIAVPVSERA QFIVKGYNLT KPSTRLLCAL EGKYLVTEAT DEVEHVDGVN KHAKLQSIKL 600 TCSIPAVSGR GFIEVEDHGL SNGFFPIIIA EEDVCSEIRM LESAIELNSA DYISGLTNNV 660 ELKSQAMDFI HEMGWLLHRN NLKARLGNSN AVLFPLKRFK WLMEFSIDHD WCAVVRKLLN 720 FLLDGTVGGE ENSFLKVSLS EMGLLHKAVR RNSRPLVELL LTYTPEEVAD ELCSEYQSLV 780 GFNGKFLFRP DIVGPAGLTP LHVAAGIDGY EDVLDALTDD PGMAAVEAWK NRRDSAGFTP 840 EDYARLRGHY SYIHLVQRKI NRVTPKHIVV DIPNNLSDRN SNQKDECAAA TFEVSQTEGR 900 LIQPCGMCDK KLAYGRQSRS LLYRPVMFSM VALAAVCVCV ALLFKSSPEV LYIFRPFRWE 960 LLDYGSS

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence

MEARMGAETQ LFNKSLEWDP NDWKWDGDLF IAKPKIPSSN YQFFPLQTGN SSSSCSDEVN  60
IGEFEKRRRR RENDENLEYD SASLSLKLGE QRGHPREFGK RTKLNTTSSR AICQVDDCGV  120
DLSNAKDYHR RHKVCEMHSK SSRALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH  180
NKRRRKTQAD SDDNSKTLND VQASGYSLMS LLRILSNMHS NRPKHIEDQD LLSHLLRSLA  240
SQGVPNGDNN LSGLLQASSN LLNNRSPSRN SDIVSLVSNG SQGPPILKEQ HFATLAAQGS  300
QRSSGVHDVR LEDVRTKSCR SPGTSFPNQN CSPAYAQARE SSARRSKLIN FDLNDVYDGS  360
DDGGENLDRS PLPSDRGIGP LEYRSWLQQD SHQSSPPSRN SDSASTQSPS SSSSDAQSRT  420
DRIVFKLFGK DPSDFPYVLR AQILDWLSHS PTEIESYIRP GCIVLTIYLR LPESAWEELC  480
CDLSSSLSRL LDFPGDSFWR KGWIYIRMQN QIAFVHDGQL LLDVPLPSET VEHTSILSVK  540
PIAVPVSERA QFIVKGYNLT KPSTRLLCAL EGKYLVTEAT DEVEHVDGVN KHAKLQSIKL  600
TCSIPAVSGR GFIEVEDHGL SNGFFPIIIA EEDVCSEIRM LESAIELNSA DYISGLTNNV  660
ELKSQAMDFI HEMGWLLHRN NLKARLGNSN AVLFPLKRFK WLMEFSIDHD WCAVVRKLLN  720
FLLDGTVGGE ENSFLKVSLS EMGLLHKAVR RNSRPLVELL LTYTPEEVAD ELCSEYQSLV  780
GFNGKFLFRP DIVGPAGLTP LHVAAGIDGY EDVLDALTDD PGMAAVEAWK NRRDSAGFTP  840
EDYARLRGHY SYIHLVQRKI NRVTPKHIVV DIPNNLSDRN SNQKDECAAA TFEVSQTEGR  900
LIQPCGMCDK KLAYGRQSRS LLYRPVMFSM VALAAVCVCV ALLFKSSPEV LYIFRPFRWE  960
LLDYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	71	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT06989