PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06983
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 885aa    MW: 99929.5 Da    PI: 9.2626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06983genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-09106152555
       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               GVr  k +gr+ A + d    +++ k+++lg+f+t eeA  a+   + +le+
  OIT06983 106 GVRKQK-NGRYGAVVTD----KIShKQVWLGTFDTIEEASHAYLSKKSELEK 152
               9**888.8******888....4235******************998888875 PP
2AP231.35e-10261306554
       AP2   5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
               GVr+ k +gr+ A I d       r k+++lg+f+t eeA  a+   + ++e
  OIT06983 261 GVRRQK-NGRYGAVITDrI-----RhKQVWLGTFDTIEEASHAYLSKKSEIE 306
               9**888.8*********32.....35******************88877766 PP
3AP230.41e-09416459552
       AP2   5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
               GVr+ k +g++ A I d       r k+++lg+f+t eeA  a+   + +
  OIT06983 416 GVRRQK-NGKYGAVITDrI-----RhKQVWLGTFDTIEEASHAYLSKKSE 459
               9**888.8*********32.....35*****************9876655 PP
4AP228.73.2e-09571617454
       AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                GVr+ k +gr+ A I d       r k+++l +f+t eeA +a+   + ++e
  OIT06983 571 LGVRRQK-NGRYGAVITDrI-----RhKKVWLDTFDTIEEASQAYLSKKSEIE 617
               6***888.8*********32.....35******************88877766 PP
5AP242.61.5e-13674720251
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
               ++ GV+ +k +g++ +eIr p++n   kr++lg+fgtaeeA +a+   ++
  OIT06983 674 HIVGVHKRKDSGKYTSEIRNPTSN---KRIWLGTFGTAEEASQAYQSKKL 720
               789*****************9764...*****************976655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    
MQQSSKRTNS TSAAAERRGK KPFIKEISFL EKAQVELQNM RRYRKDPFKM KKHAFFGTVK  60
EASKGFNMHE SKETSSLMAN VHVTESSDEC NTTRNPSAKA KRSLIGVRKQ KNGRYGAVVT  120
DKISHKQVWL GTFDTIEEAS HAYLSKKSEL EKLSQQGNEE DKPKKNLEQF QQPESPVVAS  180
LSVAYDQTLD TASHLSRRKE RINSHKTTHI VEVHKNKTSE KEPESSKETS CLMTNVNVTE  240
SSDECNTTTS CNPKATRSLL GVRRQKNGRY GAVITDRIRH KQVWLGTFDT IEEASHAYLS  300
KKSEIEKLRQ QGNKENKPKN CDQIQQPESP VVASLSVAND QTLDTASHVS KRNERIDSHE  360
TTPHFVEVHK NKTSEKEPES SKETSCLMAN VSVTESSEEC NTTTSCNPKA KRSLLGVRRQ  420
KNGKYGAVIT DRIRHKQVWL GTFDTIEEAS HAYLSKKSEF EQLSQQGNEE NKPKKNLEQI  480
QQSESPVVAS LFVATDQTLD TSSHVSRRNE RIDCHETTTH IVEVHKNKTS EKEPESSKET  540
SCLMANVSVT ESSDECNTTT SCNPKAKRSF LGVRRQKNGR YGAVITDRIR HKKVWLDTFD  600
TIEEASQAYL SKKSEIEKLR QQGNKENKPK NCDQIQQLES PVVASLSVAN DQTLDTASVR  660
RRNKRIVFVK KTTHIVGVHK RKDSGKYTSE IRNPTSNKRI WLGTFGTAEE ASQAYQSKKL  720
EFQRLVKEKQ QQCTNKQNSK KDAGKEKLVN VKQGHKNVNC EALQSESARG SEIDVPISDP  780
SNGGTDQRTD SHEIGTAEEA FHAYQSKIFD FQSSEKVELQ SKMPTDYSAG KKQEGQEDED  840
LWMGEWVQLP GNREVKFSLK LGLPIIDNYG SLLGEFSTLD DLNIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.18e-12ERF family protein