PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06857
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 325aa    MW: 35640.8 Da    PI: 9.3091
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06857genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.1e-32184238358
  CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                p+YVNaKQy++IlkRRq Rakle+++kl  k rkpylheSRh+hA++R+Rg+gGrF
   OIT06857 184 PIYVNAKQYSAILKRRQVRAKLEAQNKL-VKDRKPYLHESRHRHAMKRARGTGGRF 238
                9***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MISFSQKGVR GKEGQSFTPL FVNCSSMWSS GEPPENAPCK SVLNGAESAS KCHSNIKQTE  60
SQYQDQDSTS TLSTGQSDHV ETAMAKSNTV LQNVALHPGW DGVYEVQGES GTKAFLSGKS  120
ATNTLPQPHV HHNHPMACAS YPWADTYFGR LVATYGSNAI IYPQMVGVTS TRVALPLECT  180
ESLPIYVNAK QYSAILKRRQ VRAKLEAQNK LVKDRKPYLH ESRHRHAMKR ARGTGGRFLN  240
TKNMQQSKPS SPTHDKSIFK GTAGGNLTRS MVQHSESGSW GTSTQSGSDV TSIFSGDEMF  300
QQPEFRVSGF PFHMQEAADF MHVGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223232RHRHAMKRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.16e-45NF-YA family protein