PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06609
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 425aa    MW: 47423.9 Da    PI: 8.6026
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06609genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1771130155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  OIT06609  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 130
               57*******************766644468557*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MASPSSEPTA KPEGSSGNDV GGGETSEAMG SIGTDQLLLY RVLKKAKKER GCTAKERISK  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDEEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NVSREDYLAS LRRKSGGFSR GISKYRPLSS  180
RWDLQFGRVP GADYFNSLQY GDDATVNNEY IGGFCMDRKI DLSSYIKWWG GNKARQTDSH  240
LKTSEETKVG CPEDIDNELR ASELSIRQTE PYEMPRLGVC QERKNHKSSA LSAMSILSQS  300
AAYKSLLEKV AKKKEKVEND ENENKSTINR VDRGKTIEKS SPDSGSERLG AAFLNPGGSS  360
ISRNLHPLTP LLSAPLLTNY NNVDPLTDPV LWTSLVPIFH TGSSRTAEVH KSEATSDYTL  420
FQQED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-133AP2 family protein