PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06600
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LFY
Protein Properties Length: 416aa    MW: 46285.2 Da    PI: 6.8541
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06600genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY641.51.3e-19513961386
   FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.........leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmks 92 
               mdpeafsaslfkwdpr a+ +p++rlle a+++++p         l+aa ++ +r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeeldd+m+s
  OIT06600   1 MDPEAFSASLFKWDPRGAM-PPTTRLLEAAVAPPPPlpalpppqpLSAAYSIRTRELGGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDDMMNS 100
               9**************9876.77788888888877776676554334444444445556******************************************* PP

   FLO_LFY  93 lseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeg.lseepvqe.ekeaagsggeglgeaelvaaee..kkseeekkkas 189
               ls+ifr++llvGeryGikaa+raerrrleeee  ++r +lls+  ++aldalsqe+ lseepvq+ e+ea+gsgg+g +++e+vaa+   + +++++kk  
  OIT06600 101 LSQIFRWELLVGERYGIKAAIRAERRRLEEEE-LRRRGHLLSDGGTNALDALSQEVgLSEEPVQQqEREAVGSGGGG-TTWEVVAAAGggRMKQRRRKKVV 199
               ******************************88.8888899999999*********55******99455677777766.89999988775333444444444 PP

   FLO_LFY 190 kkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryak 290
               ++ ++r+   +++++e+++e +e+d + +++g + +erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfryak
  OIT06600 200 AAGRERRGGASAEEDEETEEGQEDDWNINDAGGGISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAK 300
               443333333443444555555555666667777778***************************************************************** PP

   FLO_LFY 291 kagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
               kagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdid++fnahprL+iWYvPtkLrqLCh ers+a+
  OIT06600 301 KAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDTIFNAHPRLAIWYVPTKLRQLCHSERSNAA 396
               *********************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MDPEAFSASL FKWDPRGAMP PTTRLLEAAV APPPPLPALP PPQPLSAAYS IRTRELGGLE  60
ELFQAYGIRY YTAAKIAELG FTVNTLLDMK DEELDDMMNS LSQIFRWELL VGERYGIKAA  120
IRAERRRLEE EELRRRGHLL SDGGTNALDA LSQEVGLSEE PVQQQEREAV GSGGGGTTWE  180
VVAAAGGGRM KQRRRKKVVA AGRERRGGAS AEEDEETEEG QEDDWNINDA GGGISERQRE  240
HPFIVTEPGE VARGKKNGLD YLFHLYEQCR DFLIQVQNIA KERGEKCPTK VTNQVFRYAK  300
KAGASYINKP KMRHYVHCYA LHCLDEEASN ALRRAFKERG ENVGAWRQAC YKPLVAIAAR  360
QGWDIDTIFN AHPRLAIWYV PTKLRQLCHS ERSNAAAAAS SSVSGGVGVG DHLPHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-143LFY family protein