PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06584
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 642aa    MW: 70598.5 Da    PI: 8.7475
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06584genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.31.6e-0764110454
       AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
               +GVr ++++g+++  Irdp     + k  +lg+f t +eA ka+   + ++e
  OIT06584  64 TGVR-NRRNGKYAGVIRDPI----KkKGAWLGTFSTVQEASKAYFSKKCEFE 110
               59*9.888**********72....35******************98888776 PP
2AP232.12.8e-10163203347
       AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 
               ++GVr +k + +++A Ird      k+kr++lg+f +a+eA ka+ 
  OIT06584 163 FTGVRKRK-NRKYAAVIRDlI----KKKRVWLGTFSSAQEASKAYF 203
               78***999.8*********76....35*****************95 PP
3AP236.89.6e-12263309252
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
               ++ GVr +  +g + +eIr p    ++ ++f+lg++gtaeeA +a+   +++
  OIT06584 263 HFIGVRKRN-SGNYTSEIRNP----ISkRKFWLGTYGTAEEASQAYQSKKLE 309
               789***888.7*********7....246*****************9877766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    
MMRHNFLGFG REKTGKQGGE SKNCEQFQPD SSGAELSPLA NDQSVNTADS SRNARSNSPE  60
IISTGVRNRR NGKYAGVIRD PIKKKGAWLG TFSTVQEASK AYFSKKCEFE NLNQGKQGGE  120
SKSFEQLQPD SSGGELTPVA YDQALNTAGV SRNARSNSSE TMFTGVRKRK NRKYAAVIRD  180
LIKKKRVWLG TFSSAQEASK AYFSKKCGFE KLNQGKQGGE SKNCEQLQPD SSGGELSPLA  240
NDQSLNTAGV SRSGRSNSPE TTHFIGVRKR NSGNYTSEIR NPISKRKFWL GTYGTAEEAS  300
QAYQSKKLEF QKQLKAKQQC SKLTSSAREK QDGKKKLVNV KLGHEAVNRE GLQPESAGGS  360
SSSEIDVPIS NSLDGGSDQG IDFHEIIHSM RFRKGKSGKY TTEITSPISM TNNLLATLGP  420
TEEAFHANPS KKLDFQSSEK VELQSHMPTD STAGEKHAGQ EDEDLWMGQW VQLPGDRTVK  480
LSLRLGLPII DNYGSLLEKT EQLDPSITKN SLGTLGPTEE AFHANPPKKL DFQISEKVEL  540
QSNMPTDSTA GEKRVGQEDE DLWMGQWVQL QTYNRQINLR DHLVINHGTS SSSNNPSKPC  600
VFNSIDTTIE EVSIIEGATG INPPLEDDLK VKKYESCADI IS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167186RKRKNRKYAAVIRDLIKKKR
2168187RKRKNRKYAAVIRDLIKKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.13e-13ERF family protein