PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06567
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 794aa    MW: 88335.1 Da    PI: 9.1757
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06567genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-10105143547
       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
               GVr +k +gr+ A I dp    +r k+++lg+f+ta+eA ka+ 
  OIT06567 105 GVRKRK-TGRYGAVITDP----IRhKKVWLGTFDTAQEASKAYL 143
               9**999.9*********7....357*****************95 PP
2AP230.59e-10360398547
       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
               GVr+ k +gr+ A I dp    +r k++++g+f+t eeA +a+ 
  OIT06567 360 GVRRQK-TGRYGAVITDP----IRhKKVWIGTFDTVEEASQAYF 398
               9**888.9*********7....357*****************95 PP
3AP227.67.5e-09445488552
       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
               GVr+ k +gr+ + I dp+    r k ++lg+f+t eeA k +   + +
  OIT06567 445 GVRRQK-NGRYGVVITDPT----RhKEVWLGTFDTVEEASKVYFSKKSE 488
               9**888.8*********84....36****************99766655 PP
4AP234.16.9e-11543587252
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
               ++ GVr +  +g + +eI        +kr++lg++gtaeeA +a+   +++
  OIT06567 543 HFIGVRKRD-SGNYSSEITIS-----KKRIWLGTYGTAEEASQAYQSKKLE 587
               789***999.7*********4.....5*****************9766655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    
MHEKRPLLGV EWQNMGRYRS ARLRKKCKHS WGTLESVKEA FKGFDSNTHE YEELGMIKQG  60
KESLIHVESS KETSCLTANV HSPRSSDHCN YMVASDPKAR RSLLGVRKRK TGRYGAVITD  120
PIRHKKVWLG TFDTAQEASK AYLVKQSEFA RLAKVNGKRP LSKVQRLKSG RCRSLLRDPI  180
KKKDVFLGNF DTAEDASEVD FSKKGKVEKL VMIKEGSISI TCEESELESS AVATSAVTGN  240
QSLNQTDGNS NERSTSFIKS PLLVVEWQNM GRYYSVSKDP FNKKKILDTL ESVEEPAKGF  300
CSNVQEMEKL VKVKQGKGPV IHEKSSRETT CSMDNVQGAK LSDGCDTVRD NPNATRSLIG  360
VRRQKTGRYG AVITDPIRHK KVWIGTFDTV EEASQAYFSK NCEFEKLNQG KQGNEPKSCE  420
QLQPESSDEC NSVTSNPKAK RSLLGVRRQK NGRYGVVITD PTRHKEVWLG TFDTVEEASK  480
VYFSKKSEFE KLNQGKQGNE PKNCEQFEPE SSSGALSPMA NDQSLNTAGV SRNGGSNSPK  540
TTHFIGVRKR DSGNYSSEIT ISKKRIWLGT YGTAEEASQA YQSKKLEFQK LLKAKQQCNK  600
QISSAREKQD GKRKLVNVML GHEIVNHEEF QSESAGGASS SGIDVPISNS SNEGSDQGID  660
FHKISHSMGV QKRKSGKYIS EITNPISMAK MLLGTVSPTE EAFHADQSKK FDFQSSKNVE  720
LQSNPTDSSA GEKQAGQEDE DLWMGQWVQL PGDRAVKFSL QLGLPIIDNY GSLLGEFSSL  780
DDLSICSNEY DNEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.16e-12ERF family protein