PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06544

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 661aa MW: 73050.8 Da PI: 6.8225

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06544	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2e-32	214	270	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g Hnh+ OIT06544 214 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERST-DGQITEIVYKGAHNHH 270 8**************************************.*************8 PP
2	WRKY	104.5	5.6e-33	421	479	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++ k v++tYeg+Hnhe OIT06544 421 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLKSVITTYEGKHNHE 479 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MERNIGEPID DWNSQIVGNL DSETMLDSQE SDAKVEERSG NAENGSLFPN NNNKRGSIAE 60 RRAAKCGFNA STISIAQFRV TSTSTPEMSP PTARPTFLTI PPGLTPAALL DSPIMLPNSL 120 APQSPTTGSF HFSNINQENT MKTTQIARDH FEFPVESPKA TALKNCSLET NVGQNMSCIG 180 LTNIHESGNC TRRANQYEQR SAVAGNNITP NGSDDGYTWR KYGQKHVKGS EFPRSYYKCT 240 QQNCPVKKKV ERSTDGQITE IVYKGAHNHH KSQPPRRATM SSTAYGLGEM SEGNIGGSNS 300 WTSVQFGRNK DARAPSGLDR TSSASVLTEA SDPLMLNYQK TNMNAFESAT PEPSSTLASR 360 DDEDEDRATE GSTSLGDDVD DYAFDHKRRR REFYSTETSL SLRTAREPRV VVQIESEIDI 420 LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCPVRKHVER APDNLKSVIT TYEGKHNHEV 480 PSTNKTNCAI SGNQALTSTS KPHKVSNSGM QVQDCNFQFN KKPFDYVRPS FVDLRFGAAS 540 SIYDLKFPTN LHNPLSYASF LLSPNPLQMP EFPLPMSLPF GPNIVPPLGG FHFNDLPLTP 600 NGVFSIAGED EKYIHDNNNN NNKSSRLVKG NEDIKNENLC DHQDGASSAV FCGQIMDNFP 660 S

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MERNIGEPID DWNSQIVGNL DSETMLDSQE SDAKVEERSG NAENGSLFPN NNNKRGSIAE  60
RRAAKCGFNA STISIAQFRV TSTSTPEMSP PTARPTFLTI PPGLTPAALL DSPIMLPNSL  120
APQSPTTGSF HFSNINQENT MKTTQIARDH FEFPVESPKA TALKNCSLET NVGQNMSCIG  180
LTNIHESGNC TRRANQYEQR SAVAGNNITP NGSDDGYTWR KYGQKHVKGS EFPRSYYKCT  240
QQNCPVKKKV ERSTDGQITE IVYKGAHNHH KSQPPRRATM SSTAYGLGEM SEGNIGGSNS  300
WTSVQFGRNK DARAPSGLDR TSSASVLTEA SDPLMLNYQK TNMNAFESAT PEPSSTLASR  360
DDEDEDRATE GSTSLGDDVD DYAFDHKRRR REFYSTETSL SLRTAREPRV VVQIESEIDI  420
LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCPVRKHVER APDNLKSVIT TYEGKHNHEV  480
PSTNKTNCAI SGNQALTSTS KPHKVSNSGM QVQDCNFQFN KKPFDYVRPS FVDLRFGAAS  540
SIYDLKFPTN LHNPLSYASF LLSPNPLQMP EFPLPMSLPF GPNIVPPLGG FHFNDLPLTP  600
NGVFSIAGED EKYIHDNNNN NNKSSRLVKG NEDIKNENLC DHQDGASSAV FCGQIMDNFP  660
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26440.1	4e-85	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT06544